· Lorena Pantano, Ph.D. , Alexandra Bartlett, Ph.D. · Podcast · 18 min listen · Coffee With CompBio
A Coffee with CompBio: The Spatial Transcriptomics Toolkit
Memory, Clustering, and Deconvolution
Alex Barlett and Lorena Pantano tackle the computational challenges of spatial transcriptomics. Learn how 𝗕𝗣𝗖𝗲𝗹𝗹𝘀 can help you work with millions of cells without needing terabytes of RAM, discover how 𝗕𝗮𝗻𝗸𝘀𝘆’𝘀 neighborhood-aware clustering reveals tissue architecture, and explore 𝗥𝗖𝗧𝗗’𝘀 approach to cell type deconvolution in spatially-resolved data. Plus, Lorena reviews 𝗣𝗼𝘀𝗶𝘁𝗿𝗼𝗻, the new R-friendly IDE that’s catching attention in the bioinformatics community.
https://lnkd.in/eZdQ-qKV - Sean Davis
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