· Sharvari Narendra, M.S. , Saba Nafees, Ph.D. , Amulya Shastry, M.S. , Dina Issakova, Ph.D. · Podcast · 15 min listen
A Coffee with CompBio: Claude Code for Bioinformatics
Can Claude Code handle real bioinformatics? Saba and Amulya put it to the test.
Claude code has taken over the tech world like a storm. But how good is Claude code when it comes to Bioinformatics and Computational Biology? In this episode of A Coffee with Compbio, Saba and Amulya take on the task of testing claude code on a simple task: performing QC on a Peripheral Blood Mononuclear Cells (PBMC) single cell dataset. They find out the dos and don’t with a tool like claude code while comparing it to how a real bioinformatician would analyze these results. Tune into this episode to learn more about Claude code for Bioinformatics.
Bonus - We share all the results, markdown files and the single cell RNA QC skills markdown file that you can try on your own!
Links from the Episode:
JournalMatch: A vibe-coded tool for finding the right match for your publication by Amulya
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Thanks Amulya Shastry for editing and management support and Dina Issakova for the cover art and social media support.
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